e66d628f287d54d9ed69b67dfa91c4da *DESCRIPTION
1d548d31ab72769b33794cb5020e0b0b *NAMESPACE
8467c4296e5b774be98255da22996733 *NEWS
f19faf3238a5a1198ff39bd623b7df43 *R/correction.R
16d198f172ae2adbb61a491a3f42eb72 *R/haplotype.R
edc5ee7c453aee280383f433ed97a39d *R/hmmClonal.R
c6a861960e2a1af765dd7ac3025b77a8 *R/paramEstimation.R
ad38a32617efe4ef37a30992cf803b93 *R/plotting.R
6d8b92c8f7cb8dea42e8dcce9b2ecda4 *R/utils.R
76f78af297d2b3aadb757d5f4b9ff26b *R/zzz.R
bc8afd851459b01381f529231c81c4e7 *README.md
5ad2515431250228875f62bd806c41d3 *build/vignette.rds
b03f1154dec790228edf224222d65653 *data/EMresults.rda
d71c8b9f7f538b57687737701fd3ac7c *data/datalist
3010282318100d1bc49271e6b307682b *inst/CITATION
9a534ec9005f354cf84439bc082f2892 *inst/doc/TitanCNA.R
96cf78262a15699ef54507c82bef061f *inst/doc/TitanCNA.Rnw
058a9206cad9b817c7a0413a2e24243e *inst/doc/TitanCNA.pdf
dbf718ea2e432662e9474e4716676e90 *inst/extdata/Seqinfo_hg19.rda
1bc0fe7cf6cb798a2263d215d9cfdb41 *inst/extdata/gc_chr2.wig
18957ae93468794b2e73d4ec3d6c8a9f *inst/extdata/map_chr2.wig
af25707bb059980f9c8706bb807efbea *inst/extdata/test_alleleCounts_chr2.txt
7fc32bbc7e5cf771af109efce3f01eda *inst/extdata/test_norm_chr2.wig
27e052f8cf829a921a2262d73cf3b85d *inst/extdata/test_tum_chr2.wig
81faa8494c40639b048a812cb03fb0ad *man/TitanCNA-dataset.Rd
78c2a650c17825ba315eb5fd37c4fcad *man/TitanCNA-output.Rd
0a10ee7276481f82592800f329bfa54d *man/TitanCNA-package.Rd
d6232419b3371217d61d30fdb9fac7be *man/TitanCNA-plotting.Rd
7f55bb6750fe71aec4e925043c0bbbe6 *man/computeSDbwIndex.Rd
4b6625bccd726fbeae8f2884c8c4366e *man/correctCN.Rd
6065a2ccabbcb7b3497519d095f4ea1b *man/correctReadDepth.Rd
2281b43e993bfc56685f3ed6e67b2646 *man/filterData.Rd
d952ecc3555dbd0da72c50989359a77b *man/getPositionOverlap.Rd
7b18090c273880beabff359d2108df9f *man/haplotype.Rd
dc9d23692431477963d60dcf141a7286 *man/loadAlleleCounts.Rd
7ce6cdbaac0e6cd2fe0e28cb236020d6 *man/loadDefaultParameters.Rd
911893b4ae95699e564c5f7ec846c472 *man/runEMclonalCN.Rd
b3e55f744d71c57a7efa5d3442c4503a *man/viterbiClonalCN.Rd
ba841ffa52c69da1790587da6b9ba216 *man/wigImport.Rd
cb4fd1a190ac9259bb888776378d4047 *src/fwd_backC_clonalCN.c
eb8b1bb132d584638d6274a82c909d23 *src/getPositionOverlapC.c
a61354ca18a7aa5ebad24611b9094d7c *src/register.c
8736baab059f4307ecd5938483e098d0 *src/titan.h
8c5ca1ad8d9bf07e77eb4423b74bf91c *src/viterbiC_clonalCN.c
96cf78262a15699ef54507c82bef061f *vignettes/TitanCNA.Rnw
36c2097608729518e2463b6ee4873afb *vignettes/TitanCNA.bib
